Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3309Saccharopine dehydrogenase, putative; Identified by similarity to SP:Q9P4R4; match to protein family HMM PF03435. (380 aa)    
Predicted Functional Partners:
lkr
Lysine-ketoglutarate reductase; Identified by similarity to SP:P43065; match to protein family HMM PF01262; match to protein family HMM PF05222.
     0.947
SPO3305
Identified by match to protein family HMM PF00300.
       0.746
SPO3308
Hypothetical protein; Identified by similarity to GB:BAC51725.1.
       0.741
SPO3306
Glutathione S-transferase, putative; Identified by similarity to GB:AAC44159.1; match to protein family HMM PF00043; match to protein family HMM PF02798.
       0.707
argH
Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
 
 
  
 0.551
SPO3304
Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
     
 0.472
SPO3334
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.452
SPO3381
Hypothetical protein; Identified by similarity to GB:BAB48813.1.
  
     0.425
SPO3341
Pyridoxal-phosphate dependent enzyme family protein; Identified by match to protein family HMM PF00291.
 
   
 0.417
SPO0285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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