Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3320Hypothetical protein; Identified by similarity to GB:AAO54466.1. (214 aa)    
Predicted Functional Partners:
SPO3321
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.915
SPO3322
Hypothetical protein; Identified by similarity to GB:CAC46971.1.
 
     0.869
SPO1109
Identified by match to protein family HMM PF03372.
  
     0.600
SPO3449
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
  
   
 0.540
SPO1897
Hypothetical protein; Identified by similarity to PIR:AF3633.
  
     0.513
SPO1341
Alkane-1 monooxygenase, putative; Identified by match to protein family HMM PF00487.
  
   
 0.499
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.498
SPO3323
Hypothetical protein; Identified by similarity to GB:CAC46974.1.
 
     0.481
SPO3540
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG032; identified in over 20 other Roseobacter strains'.
  
     0.478
SPO3325
Hypothetical protein; Identified by similarity to GB:BAB49806.1.
 
     0.456
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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