STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3331Hypothetical protein; Identified by similarity to GB:AAN40802.1; match to protein family HMM PF05143. (203 aa)    
Predicted Functional Partners:
SPO1247
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
   
 0.915
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.836
SPO2049
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
     0.800
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.746
SPO0539
Membrane protein, putative.
 
     0.541
SPO3334
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.502
SPO0540
Mercuric reductase, putative; Identified by similarity to SP:P17239.
 
     0.472
SPO3329
Globin domain protein; Identified by match to protein family HMM PF00042; Belongs to the globin family.
       0.467
SPO2690
Hypothetical protein; Identified by similarity to GB:CAB61860.1.
 
     0.427
SPO3333
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
       0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.