STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3333Hypothetical protein; Identified by similarity to GB:AAR38409.1. (528 aa)    
Predicted Functional Partners:
SPO3334
Hypothetical protein; Identified by Glimmer2; putative.
 
 
0.880
SPO2352
Type I secretion target repeat protein; Identified by similarity to SP:P55127; match to protein family HMM PF00353.
 
 
 0.870
SPO2521
Lipoprotein, putative.
  
     0.732
SPO2612
DNA-binding protein HU, putative.
  
   
 0.711
SPO0915
Hypothetical protein; Identified by similarity to PIR:AB2631.
  
     0.693
SPO1394
Beta-lactamase, putative; Identified by match to protein family HMM PF00144; match to protein family HMM PF00353.
 
 
 0.681
SPO3335
Glutamine ABC transporter, periplasmic glutamine-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497.
 
     0.660
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.495
SPO2651
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
     0.477
SPO0942
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.460
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.