Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3335Glutamine ABC transporter, periplasmic glutamine-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497. (361 aa)    
Predicted Functional Partners:
SPO3333
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
 
     0.660
SPO0915
Hypothetical protein; Identified by similarity to PIR:AB2631.
  
     0.641
SPO3334
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.546
gltK
Glutamate/aspartate ABC transporter, permease protein; Identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.433
gltJ
Glutamate/aspartate ABC transporter, permease protein; Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.422
SPO2367
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666; match to protein family HMM PF00005.
 
 
 0.419
gltL
Glutamate/aspartate ABC transporter, ATP-binding protein; Identified by similarity to SP:P41076; match to protein family HMM PF00005.
 
 
 0.414
SPO0522
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666.
 
 
 0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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