STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3336Hypothetical protein; Identified by Glimmer2; putative. (113 aa)    
Predicted Functional Partners:
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.766
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.758
SPO0373
Helicase, ATP-dependent, putative.
  
     0.738
SPO1180
Hypothetical protein; Identified by similarity to GB:BAB48908.1.
  
     0.737
SPO2987
Lipoprotein, putative; Identified by similarity to GB:AAB93481.1.
  
     0.716
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Identified by similarity to SP:P03948; match to protein family HMM PF00132; match to protein family HMM TIGR00965; Belongs to the transferase hexapeptide repeat family.
       0.701
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.679
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.609
SPO0951
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.604
SPO0933
Hypothetical protein; Identified by similarity to GB:BAB48740.1.
  
     0.596
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.