STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3340Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (199 aa)    
Predicted Functional Partners:
SPO3341
Pyridoxal-phosphate dependent enzyme family protein; Identified by match to protein family HMM PF00291.
      0.831
SPO3470
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
     0.769
SPO0762
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
     0.768
SPO3621
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
     0.716
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
    0.568
SPO3339
Identified by match to protein family HMM PF02632.
     
 0.520
SPO3342
Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730.
       0.464
pdhR
Pyruvate dehydrogenase complex repressor; Identified by similarity to SP:P06957; match to protein family HMM PF00392.
 
  
 0.461
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.