STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3344Cys/Met metabolism PLP-dependent enzyme family protein; Identified by match to protein family HMM PF01053. (361 aa)    
Predicted Functional Partners:
SPO1921
Pyridoxal-phosphate dependent enzyme; Identified by match to protein family HMM PF00291.
 0.972
cysK
Cysteine synthase A; Identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139.
 0.968
SPO1884
Identified by match to protein family HMM PF02574.
  
 
 0.942
SPO3220
Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155.
 
 
 0.927
SPO1863
Pterin-binding enzyme domain protein; Identified by match to protein family HMM PF00809.
  
 
 0.923
SPO3719
Thiosulfate sulfurtransferase, putative; Identified by similarity to PIR:T52663; match to protein family HMM PF00581.
 
 
 0.919
aspC-1
Aspartate aminotransferase; Identified by similarity to SP:Q06191.
  
 
 0.917
aspC-2
Aspartate aminotransferase; Identified by similarity to SP:Q02635; match to protein family HMM PF00155.
  
 
 0.917
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.915
SPO0388
Aminotransferase, class IV; Identified by match to protein family HMM PF01063.
  
 0.915
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.