STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3348Hypothetical protein; Identified by similarity to GB:CAD85590.1. (179 aa)    
Predicted Functional Partners:
SPO2330
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.738
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.703
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
  
     0.665
SPO3347
Hypothetical protein; Identified by similarity to SP:P42879.
       0.661
SPO0452
Hypothetical protein; Identified by similarity to PIR:AD3572.
  
     0.657
SPO3623
Hypothetical protein; Identified by similarity to GB:CAE25504.1.
 
    0.615
SPO1267
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
     0.608
SPO3349
L-asparaginase, thermolabile family; Identified by similarity to GB:AAF00929.1; match to protein family HMM PF06089.
 
     0.591
SPO1008
Hypothetical protein; Identified by similarity to GB:AAN29832.1.
  
     0.575
SPO0934
Membrane protein, putative.
  
     0.566
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.