Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
SPO3351Aha1 domain protein; Identified by similarity to PIR:G96031; match to protein family HMM PF05146. (144 aa)    
Predicted Functional Partners:
SPO3352
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
 
  
 0.943
SPO3350
Hypothetical protein; Identified by similarity to GB:BAB50844.1.
 
     0.925
SPO3787
Assignment partly based on membership in sugar ABC transporter gene cluster; identified by match to protein family HMM TIGR01409.
 
    0.716
serB-2
Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.
       0.702
SPO1915
Identified by match to protein family HMM PF00903.
 
     0.679
SPO1909
Hypothetical protein; Identified by similarity to PIR:AB2272.
 
     0.490
SPO1230
Hypothetical protein; Identified by similarity to PIR:T31014.
 
     0.485
SPO1277
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.471
SPO3785
Sugar ABC transporter, permease protein; Identified by similarity to PIR:T46751; match to protein family HMM PF00528.
 
    0.460
SPO3533
Translation elongation factor G, putative; Identified by similarity to SP:P13551; match to protein family HMM PF00679; match to protein family HMM PF03764.
  
     0.418
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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