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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sitDManganese ABC transporter, permease protein; Identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950. (309 aa)    
Predicted Functional Partners:
sitA
Manganese ABC transporter, periplasmic protein; Identified by similarity to SP:P96116; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
 0.998
sitB
Manganese ABC transporter, ATP-binding protein; Identified by similarity to SP:P96117; match to protein family HMM PF00005.
 
 0.997
sitC
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAS11742.1; match to protein family HMM PF00950.
 
  
 
0.965
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 
 0.881
znuA
Zinc ABC transporter, periplasmic zinc-binding protein; Identified by similarity to SP:P39172; match to protein family HMM PF01297.
 
  
 0.851
znuB
Zinc ABC transporter, permease protein; Identified by similarity to SP:P39832; match to protein family HMM PF00950.
  
  
  0.740
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
       0.494
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
    0.435
SPO0110
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.
    
 0.425
mur
Manganese uptake regulator; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
 
  
 0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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