STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sitCManganese ABC transporter, permease protein; Identified by similarity to GB:AAS11742.1; match to protein family HMM PF00950. (401 aa)    
Predicted Functional Partners:
sitB
Manganese ABC transporter, ATP-binding protein; Identified by similarity to SP:P96117; match to protein family HMM PF00005.
 0.998
sitA
Manganese ABC transporter, periplasmic protein; Identified by similarity to SP:P96116; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
 0.998
sitD
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950.
 
  
 
0.965
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 0.925
znuA
Zinc ABC transporter, periplasmic zinc-binding protein; Identified by similarity to SP:P39172; match to protein family HMM PF01297.
 
  
 0.818
znuB
Zinc ABC transporter, permease protein; Identified by similarity to SP:P39832; match to protein family HMM PF00950.
  
  
 
0.516
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
       0.494
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
    0.440
SPO0079
ABC transporter, ATP-binding protein; Identified by similarity to GB:AAM48706.1; match to protein family HMM PF00005.
     
 0.405
SPO2454
Permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
    
 0.401
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.