STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sitBManganese ABC transporter, ATP-binding protein; Identified by similarity to SP:P96117; match to protein family HMM PF00005. (267 aa)    
Predicted Functional Partners:
sitA
Manganese ABC transporter, periplasmic protein; Identified by similarity to SP:P96116; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.999
sitD
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950.
 
 0.997
sitC
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAS11742.1; match to protein family HMM PF00950.
 0.997
znuA
Zinc ABC transporter, periplasmic zinc-binding protein; Identified by similarity to SP:P39172; match to protein family HMM PF01297.
 
  
 0.915
znuB
Zinc ABC transporter, permease protein; Identified by similarity to SP:P39832; match to protein family HMM PF00950.
 
 0.895
zur
Zinc uptake regulation protein; Part of a zinc ABC transporter gene cluster; identified by similarity to SP:P32692; Belongs to the Fur family.
 
  
 0.637
mur
Manganese uptake regulator; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
 
  
 0.552
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
       0.506
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.494
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.422
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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