STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sitAManganese ABC transporter, periplasmic protein; Identified by similarity to SP:P96116; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. (317 aa)    
Predicted Functional Partners:
sitB
Manganese ABC transporter, ATP-binding protein; Identified by similarity to SP:P96117; match to protein family HMM PF00005.
 
 
 0.999
sitD
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950.
 
 0.998
sitC
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAS11742.1; match to protein family HMM PF00950.
 
 0.998
znuB
Zinc ABC transporter, permease protein; Identified by similarity to SP:P39832; match to protein family HMM PF00950.
  
 0.989
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
  
 0.895
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.662
naaT
Metallochaperone, putative; PMID: 21757489.
  
  
 0.629
SPO2862
CobW; Identified by similarity to SP:P29937; match to protein family HMM PF02492; match to protein family HMM PF07683.
  
  
 0.629
rpmB
Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.624
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
     
 0.552
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.