STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3377Hypothetical protein; Identified by similarity to GB:AAN30707.1. (60 aa)    
Predicted Functional Partners:
SPO2498
2''-deoxycytidine 5''-triphosphate deaminase-like protein.
  
     0.759
SPO3863
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.745
hisS
histidyl-tRNA synthetase.
  
     0.744
SPO3376
Ribosomal RNA small subunit methyltransferase B, putative; Identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.730
SPO3375
Hypothetical protein; Identified by similarity to GB:BAB50839.1.
       0.646
purH
Bifunctional purine biosynthesis protein PurH; Identified by similarity to SP:P26978; match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355.
       0.621
SPO1081
Hypothetical protein; Identified by similarity to GB:AAM82654.1.
  
     0.613
SPO0669
ATP phosphoribosyltransferase, putative; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
  
     0.591
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
     0.583
SPO3378
Benzoate transporter; Identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843.
       0.542
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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