SPO3380 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO3380

Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322. (378 aa)

Predicted Functional Partners:

SPO3381

0.995

SPO0638

0.902

SPO0847

0.716

SPO0791

0.675

SPO0849

0.651

SPO3379

0.632

lcdH

0.619

sucA

0.503

tauA

0.443

SPO0050

0.420

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0050	SPO0847	SPO0050	SPO0847	ABC transporter, periplasmic substrate-binding protein; Assignment based partly on membership in ABC transporter gene cluster.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.470
SPO0050	SPO3380	SPO0050	SPO3380	ABC transporter, periplasmic substrate-binding protein; Assignment based partly on membership in ABC transporter gene cluster.	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	0.420
SPO0638	SPO3380	SPO0638	SPO3380	Hypothetical protein; Identified by similarity to GB:AAO90814.1.	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	0.902
SPO0791	SPO0847	SPO0791	SPO0847	M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.673
SPO0791	SPO0849	SPO0791	SPO0849	M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.740
SPO0791	SPO3380	SPO0791	SPO3380	M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	0.675
SPO0847	SPO0050	SPO0847	SPO0050	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	ABC transporter, periplasmic substrate-binding protein; Assignment based partly on membership in ABC transporter gene cluster.	0.470
SPO0847	SPO0791	SPO0847	SPO0791	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.	0.673
SPO0847	SPO0849	SPO0847	SPO0849	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.996
SPO0847	SPO3380	SPO0847	SPO3380	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	0.716
SPO0849	SPO0791	SPO0849	SPO0791	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.	0.740
SPO0849	SPO0847	SPO0849	SPO0847	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.996
SPO0849	SPO3380	SPO0849	SPO3380	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	0.651
SPO0849	lcdH	SPO0849	SPO1436	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	3-hydroxyacyl-CoA dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.	0.769
SPO3379	SPO3380	SPO3379	SPO3380	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	0.632
SPO3379	SPO3381	SPO3379	SPO3381	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein; Identified by similarity to GB:BAB48813.1.	0.536
SPO3380	SPO0050	SPO3380	SPO0050	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	ABC transporter, periplasmic substrate-binding protein; Assignment based partly on membership in ABC transporter gene cluster.	0.420
SPO3380	SPO0638	SPO3380	SPO0638	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	Hypothetical protein; Identified by similarity to GB:AAO90814.1.	0.902
SPO3380	SPO0791	SPO3380	SPO0791	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.	0.675
SPO3380	SPO0847	SPO3380	SPO0847	Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.716

page 1 of 2

Server load: medium (54%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About