SPO3384 protein (Ruegeria pomeroyi) - STRING interaction network

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SPO3384

Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444. (218 aa)

Predicted Functional Partners:

SPO1725

0.722

rpsD

0.687

rpsG

0.642

rpsO

0.636

rpsE

0.632

rpsK

0.629

rpsH

0.621

rpsL

0.621

SPO3383

0.619

rpsQ

0.613

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1725	SPO3384	SPO1725	SPO3384	Hypothetical protein; Identified by similarity to GB:CAD15199.1.	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	0.722
SPO3383	SPO3384	SPO3383	SPO3384	Thiol-specific antioxidant protein; Identified by similarity to GB:BAC00970.1; match to protein family HMM PF00578.	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	0.619
SPO3384	SPO1725	SPO3384	SPO1725	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Hypothetical protein; Identified by similarity to GB:CAD15199.1.	0.722
SPO3384	SPO3383	SPO3384	SPO3383	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Thiol-specific antioxidant protein; Identified by similarity to GB:BAC00970.1; match to protein family HMM PF00578.	0.619
SPO3384	rpsD	SPO3384	SPO3181	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.687
SPO3384	rpsE	SPO3384	SPO0502	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.632
SPO3384	rpsG	SPO3384	SPO3500	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.642
SPO3384	rpsH	SPO3384	SPO0499	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.621
SPO3384	rpsK	SPO3384	SPO0510	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.629
SPO3384	rpsL	SPO3384	SPO3501	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.621
SPO3384	rpsO	SPO3384	SPO3840	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.636
SPO3384	rpsQ	SPO3384	SPO0494	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.613
rpsD	SPO3384	SPO3181	SPO3384	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.	0.687
rpsD	rpsE	SPO3181	SPO0502	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.995
rpsD	rpsG	SPO3181	SPO3500	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.995
rpsD	rpsH	SPO3181	SPO0499	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.996
rpsD	rpsK	SPO3181	SPO0510	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.995
rpsD	rpsL	SPO3181	SPO3501	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.994
rpsD	rpsO	SPO3181	SPO3840	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.990
rpsD	rpsQ	SPO3181	SPO0494	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.993

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