STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3393Hypothetical protein; Identified by similarity to GB:BAC68979.1. (136 aa)    
Predicted Functional Partners:
SPO3394
GDSL-like lipase/acylhydrolase, putative; Identified by match to protein family HMM PF00657.
 
     0.825
SPO0581
Hypothetical protein; Identified by similarity to GB:CAB95889.1.
  
     0.673
rluA
Ribosomal large subunit pseudouridine synthase A; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.554
SPO1846
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094.
  
     0.541
SPO1968
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
  
     0.536
SPO1970
Identified by match to protein family HMM PF00300.
  
     0.530
SPO1967
acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
  
     0.430
SPO1963
Identified by match to protein family HMM PF00300.
  
     0.417
SPO1957
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to GB:AAR05249.1; match to protein family HMM PF00106.
 
  
 0.416
SPO3000
Hypothetical protein; Identified by similarity to GB:BAB51623.1.
  
    0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.