STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SPO3396FAD dependent oxidoreductase/aminomethyl transferase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family. (816 aa)    
Predicted Functional Partners:
gcvH-1
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
 0.786
SPO3400
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
 
0.785
SPO1745
Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267.
 
 
 0.777
SPO1587
Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267.
  
 
 0.747
SPO2346
Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267.
  
 
 0.747
SPO3403
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
 
  
 0.679
SPO1585
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375.
  
 
 0.677
SPO1747
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268.
  
 
 0.677
SPO2344
Sarcosine oxidase, gamma subunit family; Identified by similarity to SP:Q46338; match to protein family HMM PF04268.
  
 
 0.677
SPO0564
Aminomethyl transferase family protein; Belongs to the GcvT family.
 
 
0.594
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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