STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3403DNA-binding protein, putative; Identified by match to protein family HMM PF01381. (189 aa)    
Predicted Functional Partners:
SPO3400
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
  
 0.858
SPO3398
Identified by match to protein family HMM PF02574.
  
    0.812
SPO3399
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
  
  
 0.783
SPO3401
Hypothetical protein; Identified by similarity to GB:BAB48331.1; match to protein family HMM PF04828.
       0.781
SPO3402
Transporter, LysE family; Identified by similarity to SP:P27847; match to protein family HMM PF01810.
       0.775
SPO3397
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
  
 0.758
SPO3313
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
  
 0.688
SPO3396
FAD dependent oxidoreductase/aminomethyl transferase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.
 
  
 0.679
SPO2068
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
  
 0.566
SPO3404
Hypothetical protein; Identified by similarity to GB:AAQ58177.1; match to protein family HMM PF06961.
       0.481
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.