SPO3410 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO3410

Anti-sigma B factor, putative; Identified by similarity to SP:P17904; match to protein family HMM PF02518. (149 aa)

Predicted Functional Partners:

flgH

0.999

flgB

0.999

SPO0193

0.999

SPO0202

0.999

motA

0.999

fliG

0.999

SPO2748

0.999

SPO3409

0.999

SPO3457

0.999

SPO0022

0.971

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0022	SPO0193	SPO0022	SPO0193	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	0.659
SPO0022	SPO0202	SPO0022	SPO0202	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Hypothetical protein; Identified by similarity to PIR:E83956.	0.529
SPO0022	SPO2748	SPO0022	SPO2748	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Hypothetical protein; Identified by similarity to PIR:AG2090.	0.952
SPO0022	SPO3409	SPO0022	SPO3409	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.981
SPO0022	SPO3410	SPO0022	SPO3410	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Anti-sigma B factor, putative; Identified by similarity to SP:P17904; match to protein family HMM PF02518.	0.971
SPO0022	SPO3457	SPO0022	SPO3457	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Flagellin synthesis repressor protein FlbT, putative.	0.722
SPO0022	flgB	SPO0022	SPO0182	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Flagellar basal-body rod protein; Identified by similarity to SP:P24500; similarity to SP:P75934.	0.808
SPO0022	flgH	SPO0022	SPO0175	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.596
SPO0022	fliG	SPO0022	SPO2308	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	Flagellar motor switch protein FliG; Identified by similarity to SP:P23448; match to protein family HMM PF01706.	0.822
SPO0193	SPO0022	SPO0193	SPO0022	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	0.659
SPO0193	SPO0202	SPO0193	SPO0202	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Hypothetical protein; Identified by similarity to PIR:E83956.	0.949
SPO0193	SPO2748	SPO0193	SPO2748	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Hypothetical protein; Identified by similarity to PIR:AG2090.	0.582
SPO0193	SPO3409	SPO0193	SPO3409	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.848
SPO0193	SPO3410	SPO0193	SPO3410	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Anti-sigma B factor, putative; Identified by similarity to SP:P17904; match to protein family HMM PF02518.	0.999
SPO0193	SPO3457	SPO0193	SPO3457	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Flagellin synthesis repressor protein FlbT, putative.	0.969
SPO0193	flgB	SPO0193	SPO0182	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein; Identified by similarity to SP:P24500; similarity to SP:P75934.	0.967
SPO0193	flgH	SPO0193	SPO0175	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.979
SPO0193	fliG	SPO0193	SPO2308	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Flagellar motor switch protein FliG; Identified by similarity to SP:P23448; match to protein family HMM PF01706.	0.999
SPO0193	motA	SPO0193	SPO0203	Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.	Chemotaxis protein MotA; Identified by similarity to SP:P09348; match to protein family HMM PF01618.	0.978
SPO0202	SPO0022	SPO0202	SPO0022	Hypothetical protein; Identified by similarity to PIR:E83956.	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.	0.529

page 1 of 6

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About