Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO3421Hypothetical protein; Identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966; Belongs to the UPF0434 family. (62 aa)    
Predicted Functional Partners:
SPO3422
ATP-dependent protease La domain protein; Identified by match to protein family HMM PF02190.
       0.836
SPO3423
Thioredoxin; Identified by match to protein family HMM PF00085.
       0.781
SPO3420
Hypothetical protein; Identified by similarity to GB:BAB50604.1.
       0.773
SPO3425
Exodeoxyribonuclease III, putative; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633.
  
    0.565
SPO0339
Identified by match to protein family HMM PF01553.
  
     0.504
SPO3424
Leucine rich repeat protein; Identified by match to protein family HMM PF00560.
       0.498
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Identified by match to protein family HMM PF02348.
  
  
 0.461
SPO1386
HIT family protein; Identified by match to protein family HMM PF01230.
  
    0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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