STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3422ATP-dependent protease La domain protein; Identified by match to protein family HMM PF02190. (214 aa)    
Predicted Functional Partners:
SPO3423
Thioredoxin; Identified by match to protein family HMM PF00085.
 
  
 0.840
SPO3421
Hypothetical protein; Identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966; Belongs to the UPF0434 family.
       0.836
SPO3420
Hypothetical protein; Identified by similarity to GB:BAB50604.1.
       0.773
SPO3425
Exodeoxyribonuclease III, putative; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633.
       0.538
SPO3424
Leucine rich repeat protein; Identified by match to protein family HMM PF00560.
       0.498
SPO2452
DNA polymerase III, chi subunit, putative; Identified by match to protein family HMM PF04364.
  
     0.497
SPO1869
Identified by match to protein family HMM PF01722; Belongs to the BolA/IbaG family.
  
     0.471
SPO3320
Hypothetical protein; Identified by similarity to GB:AAO54466.1.
      
 0.415
SPO2228
Identified by match to protein family HMM PF00578.
   
  
 0.411
SPO1414
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
   
 0.403
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.