STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3424Leucine rich repeat protein; Identified by match to protein family HMM PF00560. (556 aa)    
Predicted Functional Partners:
SPO3423
Thioredoxin; Identified by match to protein family HMM PF00085.
       0.553
SPO0157
TROVE domain protein; Identified by match to protein family HMM PF05731.
  
     0.530
SPO3420
Hypothetical protein; Identified by similarity to GB:BAB50604.1.
       0.498
SPO3421
Hypothetical protein; Identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966; Belongs to the UPF0434 family.
       0.498
SPO3422
ATP-dependent protease La domain protein; Identified by match to protein family HMM PF02190.
       0.498
SPO3425
Exodeoxyribonuclease III, putative; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633.
       0.463
SPO1059
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069.
 
  
 0.418
SPO1186
TPR domain protein; Identified by similarity to PIR:AG2285; match to protein family HMM PF00515.
  
     0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.