STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3430Outer membrane porin; Identified by similarity to GB:CAA70599.1. (337 aa)    
Predicted Functional Partners:
SPO2084
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.689
SPO0945
Identified by match to protein family HMM PF05170.
  
     0.674
SPO3429
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.655
SPO3431
Hypothetical protein; Identified by similarity to GB:AAK25710.1.
 
   
 0.649
SPO3372
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.621
SPO3481
Membrane protein, putative.
  
     0.546
SPO0304
Lipoprotein, putative.
  
     0.542
SPO3727
VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.
   
 
 0.536
SPO1933
Identified by match to protein family HMM PF06776.
  
     0.521
SPO2166
Lipoprotein, putative.
  
     0.519
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.