STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3431Hypothetical protein; Identified by similarity to GB:AAK25710.1. (168 aa)    
Predicted Functional Partners:
leuS
leucyl-tRNA synthetase; Identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.829
SPO3433
Lipoprotein, putative.
 
     0.808
SPO3434
Hypothetical protein; Identified by similarity to GB:CAE25733.1.
 
     0.808
SPO3372
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.766
SPO2490
Lipoprotein, SmpA/OmlA family; Identified by match to protein family HMM PF04355.
  
     0.750
pbpA
Penicillin-binding protein 2; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717.
  
     0.693
SPO3430
Outer membrane porin; Identified by similarity to GB:CAA70599.1.
 
   
 0.678
SPO0230
Hypothetical protein; Identified by similarity to GB:AAK25258.1.
  
     0.673
SPO2329
PQQ enzyme repeat family protein; Identified by match to protein family HMM PF01011.
  
    0.650
SPO3873
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
  
     0.623
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.