STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3433Lipoprotein, putative. (163 aa)    
Predicted Functional Partners:
SPO3434
Hypothetical protein; Identified by similarity to GB:CAE25733.1.
 
    0.895
leuS
leucyl-tRNA synthetase; Identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.861
SPO3431
Hypothetical protein; Identified by similarity to GB:AAK25710.1.
 
     0.808
SPO0081
Hypothetical protein; Identified by similarity to GB:AAM48708.1.
  
     0.747
SPO3435
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
       0.733
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.729
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.713
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.700
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.686
SPO1310
Hypothetical protein; Identified by similarity to GB:BAB50927.1; match to protein family HMM PF07049.
  
     0.627
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.