STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3446Thiol:disulfide interchange protein, DsbA family; Identified by match to protein family HMM PF01323. (222 aa)    
Predicted Functional Partners:
SPO3447
Hypothetical protein; Identified by similarity to GB:CAE29927.1.
 
     0.872
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.723
SPO2591
27 kDa outer membrane protein, putative; Identified by similarity to PIR:A49232; match to protein family HMM PF01323.
 
   
 0.628
SPO2117
Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600.
 
 
 0.577
SPO3449
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
       0.511
SPO1194
Cell division protein FtsW; Identified by similarity to SP:P16457; match to protein family HMM PF01098; Belongs to the SEDS family.
 
  
 0.496
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.494
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
 
    0.466
SPO1224
Hypothetical protein; Identified by similarity to GB:BAB66386.1.
 
     0.456
SPO2760
Identified by match to protein family HMM PF00753; match to protein family HMM PF07521.
 
     0.454
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.