STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3449Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487. (377 aa)    
Predicted Functional Partners:
SPO1341
Alkane-1 monooxygenase, putative; Identified by match to protein family HMM PF00487.
  
  
 
0.917
aasadh
Alpha-aminoadipic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
  
 0.911
SPO3850
Glutathione-dependent formaldehyde dehydrogenase; Identified by similarity to SP:P45382; match to protein family HMM PF00107; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.905
SPO0097
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.900
SPO3368
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.900
SPO3382
Identified by match to protein family HMM PF00171.
     
 0.900
SPO1897
Hypothetical protein; Identified by similarity to PIR:AF3633.
  
   
 0.761
SPO1769
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.715
SPO1898
Identified by match to protein family HMM PF00067.
 
   
 0.702
kpsS
Capsular polysaccharide export protein KpsS; Identified by similarity to SP:P42218; match to protein family HMM PF05159.
  
     0.693
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.