Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3452aHypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG015; similar gene identified in less than 5 other Roseobacter strains'. (158 aa)    
Predicted Functional Partners:
SPO3453
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.818
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.812
SPO3454
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.805
SPO3119
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.704
SPO0615
Hypothetical protein; Identified by similarity to GB:CAD73596.1.
  
     0.651
SPO2925
Sporulation related protein; 'Novel gene detected by proteogenomics, SPO_PG029; identified in over 20 other Roseobacter strains'.
  
     0.627
SPO2845
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.564
SPO3451
Modification methylase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
       0.551
SPO2693
Hypothetical protein; Identified by similarity to GB:AAN33954.1.
  
     0.542
SPO1128
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.501
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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