STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3453Hypothetical protein; Identified by Glimmer2; putative. (149 aa)    
Predicted Functional Partners:
SPO3454
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.967
SPO3452a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG015; similar gene identified in less than 5 other Roseobacter strains'.
 
     0.821
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.691
SPO2925
Sporulation related protein; 'Novel gene detected by proteogenomics, SPO_PG029; identified in over 20 other Roseobacter strains'.
  
     0.626
chvG
Sensor histidine kinase ChvG.
  
     0.604
SPO2652
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.593
SPO2773
Lipoprotein, putative.
  
     0.584
SPO1349
Lipoprotein, putative.
  
     0.568
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.522
SPO2916
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.518
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.