Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
SPO3457Flagellin synthesis repressor protein FlbT, putative. (134 aa)    
Predicted Functional Partners:
SPO3458
Flagellar protein FlaF, putative.
 
  
 0.999
SPO3456
Flagellar protein, putative; Identified by similarity to PIR:AC3648.
 
  
 0.980
SPO1678
Hypothetical protein; Identified by similarity to PIR:AE3305.
   
    0.971
SPO3410
Anti-sigma B factor, putative; Identified by similarity to SP:P17904; match to protein family HMM PF02518.
   
    0.971
SPO3459
Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.971
SPO0193
Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
 
  
 0.922
SPO3461
Flagellar protein FlgJ, putative; Identified by similarity to SP:P75942.
 
  
 0.900
fliE
Flagellar hook-basal body complex protein FliE, putative; Identified by similarity to SP:P24502.
 
  
 0.889
flgA
Flagellar basal-body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
  
 0.880
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.879
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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