STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3458Flagellar protein FlaF, putative. (125 aa)    
Predicted Functional Partners:
SPO3457
Flagellin synthesis repressor protein FlbT, putative.
 
  
 0.999
SPO3459
Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.998
SPO3456
Flagellar protein, putative; Identified by similarity to PIR:AC3648.
 
  
 0.974
SPO0193
Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
 
  
 0.928
SPO3461
Flagellar protein FlgJ, putative; Identified by similarity to SP:P75942.
 
    0.906
flgB
Flagellar basal-body rod protein; Identified by similarity to SP:P24500; similarity to SP:P75934.
 
  
 0.898
SPO0201
Hypothetical protein; Identified by similarity to GB:AAF27716.1.
  
    0.875
SPO0174
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.871
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
    0.871
SPO0194
Flagellar hook-associated protein FlgL family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.868
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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