STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3460Hypothetical protein; Identified by similarity to PIR:E98268. (119 aa)    
Predicted Functional Partners:
SPO3461
Flagellar protein FlgJ, putative; Identified by similarity to SP:P75942.
 
     0.953
SPO3462
Flagellar hook-length control protein; Identified by match to protein family HMM PF02120.
 
     0.772
SPO1026
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.690
flgD
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
     0.657
SPO2581
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.622
SPO3716
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.586
SPO2486
Hypothetical protein; Identified by similarity to GB:AAL49478.1.
  
     0.562
SPO3457
Flagellin synthesis repressor protein FlbT, putative.
 
     0.561
SPO3458
Flagellar protein FlaF, putative.
 
     0.541
SPO0198
ABC transporter, ATP-binding protein, flagellar, putative.
  
     0.534
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.