STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potGPutrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (375 aa)    
Predicted Functional Partners:
potH
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31135; match to protein family HMM PF00528.
 0.994
potI
Putrescine ABC transporter, permease protein; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
 
 0.993
potF
Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.986
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  
 0.897
SPO3465
Hypothetical protein; Identified by similarity to GB:CAE33186.1.
 
  
 0.865
SPO1607
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P31136; match to protein family HMM PF00528.
  
 0.825
potB
Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528.
 
 0.817
SPO0703
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.810
SPO2700
Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.787
potD
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
 0.773
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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