Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO2009 | SPO2701 | SPO2009 | SPO2701 | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | 0.428 |
| SPO2009 | SPO2702 | SPO2009 | SPO2702 | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | Opine/polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. | 0.761 |
| SPO2009 | SPO3473 | SPO2009 | SPO3473 | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | Assignment partly based on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF01547. | 0.428 |
| SPO2009 | SPO3475 | SPO2009 | SPO3475 | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528. | 0.956 |
| SPO2009 | potA-3 | SPO2009 | SPO3472 | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. | 0.634 |
| SPO2009 | potB | SPO2009 | SPO1608 | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | Spermidine/putrescine ABC transporter, permease protein; Identified by similarity to SP:P23860; match to protein family HMM PF00528. | 0.913 |
| SPO2009 | potF | SPO2009 | SPO3469 | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. | 0.666 |
| SPO2700 | SPO2701 | SPO2700 | SPO2701 | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | 0.991 |
| SPO2700 | SPO2702 | SPO2700 | SPO2702 | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Opine/polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. | 0.992 |
| SPO2700 | SPO3473 | SPO2700 | SPO3473 | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Assignment partly based on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF01547. | 0.949 |
| SPO2700 | SPO3474 | SPO2700 | SPO3474 | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Polyamine ABC transporter, permease protein; Assignment based partly on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | 0.917 |
| SPO2700 | SPO3475 | SPO2700 | SPO3475 | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528. | 0.998 |
| SPO2700 | potA-3 | SPO2700 | SPO3472 | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. | 0.972 |
| SPO2700 | potF | SPO2700 | SPO3469 | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. | 0.805 |
| SPO2701 | SPO2009 | SPO2701 | SPO2009 | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | Spermidine/putrescine ABC transporter, permease protein; Assignment based partly on membership in spermidine/putrescine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | 0.428 |
| SPO2701 | SPO2700 | SPO2701 | SPO2700 | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | Opine/polyamine ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.991 |
| SPO2701 | SPO2702 | SPO2701 | SPO2702 | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | Opine/polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. | 0.976 |
| SPO2701 | SPO3473 | SPO2701 | SPO3473 | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | Assignment partly based on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF01547. | 0.926 |
| SPO2701 | SPO3474 | SPO2701 | SPO3474 | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | Polyamine ABC transporter, permease protein; Assignment based partly on membership in polyamine ABC transporter gene cluster; identified by match to protein family HMM PF00528. | 0.981 |
| SPO2701 | SPO3475 | SPO2701 | SPO3475 | Opine/polyamine ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM TIGR01409. | Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528. | 0.980 |
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