Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3481Membrane protein, putative. (400 aa)    
Predicted Functional Partners:
SPO0212
Hypothetical protein; Identified by similarity to PIR:G97622.
 
  
 0.560
SPO3482
Trypsin domain protein; Identified by match to protein family HMM PF00089.
       0.551
SPO3483
Hypothetical protein; Identified by similarity to PIR:E85765; Belongs to the peptidase S1B family.
       0.551
SPO3430
Outer membrane porin; Identified by similarity to GB:CAA70599.1.
  
     0.546
SPO3464
Hypothetical protein; Identified by similarity to GB:CAB76068.1.
 
    0.441
SPO1130
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
     0.424
SPO0764
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
 0.415
SPO3229
Lipoprotein, putative.
  
     0.414
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
     
 0.402
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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