STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3483Hypothetical protein; Identified by similarity to PIR:E85765; Belongs to the peptidase S1B family. (272 aa)    
Predicted Functional Partners:
SPO3482
Trypsin domain protein; Identified by match to protein family HMM PF00089.
 
    
0.797
SPO3484
Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
       0.581
SPO3174
Hypothetical protein; Identified by similarity to GB:AAK24192.1.
  
     0.552
SPO3481
Membrane protein, putative.
       0.551
SPO1308
Hypothetical protein; Identified by similarity to PIR:F83007.
  
    0.506
SPO0345
Hypothetical protein; Identified by similarity to GB:AAN82305.1; match to protein family HMM PF05656.
  
  
 0.465
SPO1241
Hypothetical protein; Identified by similarity to GB:AAK23300.1.
  
     0.436
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.