STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3511Hypothetical protein; Identified by Glimmer2; putative. (308 aa)    
Predicted Functional Partners:
SPO3864
Hypothetical protein; Identified by similarity to PIR:H84070.
 
     0.693
SPO1016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.668
SPO2334
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.624
SPO2341
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
  
     0.616
SPO3260
Methyltransferase-like protein; Identified by similarity to GB:AAD44211.1.
  
     0.565
SPO0767
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
  
     0.558
SPO2208
Hypothetical protein; Identified by similarity to GB:BAB53466.1.
  
     0.550
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
  
     0.543
SPO1866
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.537
SPO0286
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.536
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.