STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3518Hypothetical protein; Identified by similarity to GB:CAE28126.1. (140 aa)    
Predicted Functional Partners:
SPO3522
Iron-sulfur-binding protein, RdxA/RdxB/FixG family; Identified by similarity to SP:P18396; match to protein family HMM PF00037.
  
  
 0.682
SPO3521
fixH protein, putative; Identified by similarity to SP:P18397.
  
    0.641
SPO3520
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
    0.636
ccoS
Cytochrome oxidase maturation protein, cbb3-type; Identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847.
       0.625
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
       0.598
ccoQ-1
Cytochrome c oxidase, cbb3-type, subunit IV; Identified by similarity to GB:AAB02558.1; match to protein family HMM PF05545.
 
     0.428
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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