STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejAOligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. (646 aa)    
Predicted Functional Partners:
yejB
Oligopeptide/dipeptide uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.971
yejE
Oligopeptide/dipeptide uptake family ABC transporter, permease protein; Identified by similarity to SP:P33915; match to protein family HMM PF00528.
 
  
 0.963
yejF
Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P33916; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.941
SPO2552
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.601
SPO0561
ABC transporter; 'initially identified as a pseudogene, expression verified by proteomics'; Belongs to the ABC transporter superfamily.
 
  
 0.537
SPO0098
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.522
cycM
Cytochrome c552; Identified by similarity to SP:P54820; match to protein family HMM PF00034.
       0.522
naaA
N-acetyltaurine ABC transporter, periplasmic binding protein; PMID: 21757489.
 
 
 0.488
SPO1213
Oligopeptide ABC transporter, ATP-binding protein; Substrate assignment partly based on location in oligopeptide ABC transporter gene cluster; identified by similarity to SP:P75796; match to protein family HMM PF00005.
 
  
 0.474
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
  
   
 0.458
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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