STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3551Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (157 aa)    
Predicted Functional Partners:
SPO3552
Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01266.
 
     0.803
cobO
cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
      0.627
SPO3553
Hypothetical protein; Identified by similarity to PIR:C75368; match to protein family HMM PF05430.
       0.560
SPO3554
Membrane protein, putative; Identified by match to protein family HMM PF00892.
       0.560
SPO1388
Transcriptional regulator, LuxR family/hydrolase, alpha/beta fold family; Identified by similarity to GB:BAC51348.1; match to protein family HMM PF00196; match to protein family HMM PF00561.
 
   
 0.510
SPO3849
Hypothetical protein; Identified by similarity to GB:BAB47957.1; match to protein family HMM PF06718.
  
     0.458
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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