Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tauRTaurine transcriptional regulator; Identified by match to protein family HMM PF00392; PMID: 17153584. (488 aa)    
Predicted Functional Partners:
xsc
Sulfoacetaldehyde acetyltransferase; Identified by similarity to SP:Q84H44; match to protein family HMM PF00205; match to protein family HMM PF02776; PMID: 16541231; Belongs to the TPP enzyme family.
 
  
 0.885
tpa
Taurine--pyruvate aminotransferase; Identified by similarity to SP:Q9APM5; PMID: 16541231; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.600
tauA
Taurine ABC transporter, periplasmic taurine-binding protein; Assignment partly based on membership in taurine ABC transporter gene cluster; identified by similarity to SP:Q47537; PMID: 16541231.
 
   
 0.512
soeA
Sulfite dehydrogenase molybdopterin cofacter-binding subunit SoeA; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
    0.509
SPO3563
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
       0.506
SPO3564
Permease, putative; Identified by match to protein family HMM PF03773.
       0.506
pta
Phosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; PMID: 16541231.
       0.504
soeC
Sulfite dehydrogenase subunit SoeC; Identified by match to protein family HMM PF04976.
 
   
 0.502
soeB
Sulfite dehydrogenase iron-sulfur cluster-binding subunit SoeB; Identified by match to protein family HMM PF00037.
 
     0.445
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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