STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3564Permease, putative; Identified by match to protein family HMM PF03773. (342 aa)    
Predicted Functional Partners:
SPO3563
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
 
  
 0.961
SPO3877
Transcriptional regulator/arsenate reductase; Identified by similarity to GB:AAF69239.1; match to protein family HMM PF01022; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.615
tauR
Taurine transcriptional regulator; Identified by match to protein family HMM PF00392; PMID: 17153584.
       0.506
SPO2981
Hypothetical protein; Identified by similarity to GB:CAC67530.1.
  
    0.470
SPO0692
Multicopper oxidase; Identified by similarity to GB:AAD24211.1.
  
  
 0.422
SPO1361
Multicopper oxidase domain protein; Identified by match to protein family HMM PF00394.
  
  
 0.422
SPO3671
Muticopper oxidase domain protein; Identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409.
  
  
 0.422
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.