STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3566Hypothetical protein; Identified by similarity to GB:CAC47907.1. (258 aa)    
Predicted Functional Partners:
lysS
lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.792
SPO1907
Hypothetical protein; Identified by similarity to GB:AAK24073.1.
  
   
 0.784
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.770
SPO1033
Hypothetical protein; Identified by similarity to GB:BAB50739.1.
  
   
 0.726
SPO3567
Identified by match to protein family HMM PF00445; Belongs to the RNase T2 family.
       0.723
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
  
     0.711
SPO2285
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.697
SPO2959
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.675
SPO0083
Exonuclease, putative; Identified by match to protein family HMM PF01612.
  
     0.665
SPO1174
DNA helicase II, putative; Identified by match to protein family HMM PF00580.
 
      0.665
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.