SPO3571 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO3571

Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (320 aa)

Predicted Functional Partners:

SPO3572

0.772

SPO3570

0.618

recR

0.461

SPO1395

0.443

SPO3568

0.422

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1395	SPO3571	SPO1395	SPO3571	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.443
SPO3568	SPO3570	SPO3568	SPO3570	Hypothetical protein; Identified by similarity to PIR:D95307.	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.539
SPO3568	SPO3571	SPO3568	SPO3571	Hypothetical protein; Identified by similarity to PIR:D95307.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.422
SPO3568	recR	SPO3568	SPO3569	Hypothetical protein; Identified by similarity to PIR:D95307.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.699
SPO3570	SPO3568	SPO3570	SPO3568	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Hypothetical protein; Identified by similarity to PIR:D95307.	0.539
SPO3570	SPO3571	SPO3570	SPO3571	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.618
SPO3570	SPO3572	SPO3570	SPO3572	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Identified by match to protein family HMM PF00857.	0.452
SPO3570	recR	SPO3570	SPO3569	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.967
SPO3571	SPO1395	SPO3571	SPO1395	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.443
SPO3571	SPO3568	SPO3571	SPO3568	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	Hypothetical protein; Identified by similarity to PIR:D95307.	0.422
SPO3571	SPO3570	SPO3571	SPO3570	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.618
SPO3571	SPO3572	SPO3571	SPO3572	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	Identified by match to protein family HMM PF00857.	0.772
SPO3571	recR	SPO3571	SPO3569	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.461
SPO3572	SPO3570	SPO3572	SPO3570	Identified by match to protein family HMM PF00857.	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.452
SPO3572	SPO3571	SPO3572	SPO3571	Identified by match to protein family HMM PF00857.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.772
recR	SPO3568	SPO3569	SPO3568	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Hypothetical protein; Identified by similarity to PIR:D95307.	0.699
recR	SPO3570	SPO3569	SPO3570	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Putative protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.	0.967
recR	SPO3571	SPO3569	SPO3571	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.461

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About