STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3573NADPH-dependent FMN reductase domain protein; Identified by match to protein family HMM PF03358. (180 aa)    
Predicted Functional Partners:
SPO3877
Transcriptional regulator/arsenate reductase; Identified by similarity to GB:AAF69239.1; match to protein family HMM PF01022; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.538
SPO3575
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.
     
 0.537
SPO1076
trkA-C domain protein; Identified by match to protein family HMM PF02080.
  
  
 0.524
SPO2952
trkA domain protein; Identified by match to protein family HMM PF02080.
  
  
 0.524
SPO0953
Hypothetical protein; Identified by similarity to GB:BAB49280.1.
  
  
 0.519
SPO3494
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
  
  
 0.519
SPO3574
Hypothetical protein; Identified by similarity to GB:CAD17119.1.
       0.517
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.436
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
  
 
 0.436
SPO0050
ABC transporter, periplasmic substrate-binding protein; Assignment based partly on membership in ABC transporter gene cluster.
  
  
 0.425
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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