STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3573NADPH-dependent FMN reductase domain protein; Identified by match to protein family HMM PF03358. (180 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.538
SPO0953
Hypothetical protein; Identified by similarity to GB:BAB49280.1.
  
  
 0.530
SPO3494
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
  
  
 0.530
SPO3575
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.
  
  
 0.528
SPO3574
Hypothetical protein; Identified by similarity to GB:CAD17119.1.
       0.518
SPO3877
Transcriptional regulator/arsenate reductase; Identified by similarity to GB:AAF69239.1; match to protein family HMM PF01022; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.511
SPO1076
trkA-C domain protein; Identified by match to protein family HMM PF02080.
  
  
 0.502
SPO2952
trkA domain protein; Identified by match to protein family HMM PF02080.
  
  
 0.502
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
  
 
 0.482
SPO2518
Identified by match to protein family HMM PF00296.
  
 
 0.448
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.