Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO3576OmpA domain protein; Identified by match to protein family HMM PF00691. (221 aa)    
Predicted Functional Partners:
SPO3171
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
 
 0.651
SPO1638
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464.
  
     0.526
tolB
TolB, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.510
SPO3577
Hypothetical protein; Identified by similarity to GB:BAB51517.1.
       0.497
SPO3575
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.
  
  
 0.489
SPO0192
Flagellar hook protein FlgE, putative; Identified by similarity to SP:O07884; match to protein family HMM PF00460; match to protein family HMM PF06429.
   
 
 0.481
SPO3574
Hypothetical protein; Identified by similarity to GB:CAD17119.1.
       0.475
SPO3578
ADA regulatory protein; Identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM TIGR00589.
 
     0.464
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P24501; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
   
   0.458
bamA
Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.455
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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