STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadH2,4-dienoyl-CoA reductase; Identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724. (675 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
  
 
 0.998
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974.
  
 
 0.886
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975.
  
 
 0.884
SPO1575
Identified by match to protein family HMM PF01493.
  
 
 0.864
SPO1576
Glutamine amidotransferase, class II; Identified by match to protein family HMM PF00310.
  
 
 0.864
SPO1574
Identified by match to protein family HMM PF01645; Belongs to the glutamate synthase family.
  
 
 0.823
SPO3272
Identified by match to protein family HMM PF01645; Belongs to the glutamate synthase family.
  
 
 0.823
SPO0589
Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.
  
 0.741
paaK
Phenylacetic acid degradation oxidoreductase PaaK; Identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160.
  
 0.731
SPO1777
Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
  
 
 0.724
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.