STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3591Auxin efflux carrier family protein; Identified by match to protein family HMM PF03547. (304 aa)    
Predicted Functional Partners:
SPO1233
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.603
SPO3590
Hypothetical protein; Identified by similarity to PIR:B83607.
       0.526
maeB
NADP-dependent malic enzyme; Identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.
  
  
 0.517
SPO2932
Malate dehydrogenase; Identified by similarity to SP:O30807; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.
  
  
 0.517
SPO0265
Auxin efflux carrier family protein; Identified by similarity to GB:AAA99820.1; match to protein family HMM PF03547.
  
     0.499
SPO3592
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.476
SPO3843
Malonate transporter, putative; Identified by similarity to GB:AAC45458.1; match to protein family HMM PF03547.
  
     0.466
SPO1098
Hypothetical protein; Identified by similarity to GB:AAM43280.1.
 
     0.419
SPO1076
trkA-C domain protein; Identified by match to protein family HMM PF02080.
  
   0.411
SPO2952
trkA domain protein; Identified by match to protein family HMM PF02080.
  
   0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.